Sequence
atgc intronic sequence ATGC exonic sequencegtgagttttgttctgccacttaatctctactttggttctttaccgaggattttataacttctatttccctttgcattgacctaaaaatattgagtggttatggcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAG
Basic information
species | Glycine max |
transcript | GLYMA17G11600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 3'ss of exon 8
------------gtgagtttt--gttctgcc-acttaatc-tctactttggttctttaccgaggattttataacttctatttccctttgcattgacctaaaaatattgagtggttatg-gcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAG
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gttagtagcttattgattctcaagtttaacttacataattgtccatattatatccggttcggtatgattttgagtactattttcttgttcaagtgtctgactggttttcttacccctttacagGAACCACTCTTAAAAATAGAGCTAAACAATCCTGCTTTGCTTGCTGGGAATTGGACACAGCTCTGTGCAACATGCAAG
upper sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 8
gtgagttttgttctgccacttaatctctactttggttctttaccgaggattttataacttctatttccctttgcattgacctaaaaatattgagtggttatggcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAG
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---gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttcatttatgtttttaagtgtgtctaatctattatg---ttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23731604|gb|BU763933.1|BU763933EST: CTGGTTATATCAGGATGAATATGCATGACAATCAGGATACAAAAGATGAC GAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAAT
genomic: CTGGTTATATCAGGATGAATATGCATGACAATCAGGATACAAAAGATGACgtgagttttg ... gttatggcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttataacttctatttccctttgcattgacctaaaaatattgagtggttatggcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAG
taaaaatattgagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttttgttctgccacttaatctctactttggttctttaccgaggattttataacttctatttccctttgcattgacctaaaaatattgagtggttatggcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA