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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacttgccatccttccctgttttatgtgcttgtgtgaaaatggaagtagccatattgactaactaatcctcttatatgcagATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTTCAACACACTGTATTCCATCGGCAATGTCTGATGATCTTAAGTCATGAT

Basic information

species Glycine max
transcript GLYMA17G09970.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09970.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 3'ss of exon 8
--------gttcacttgccatccttccctgttttatgtgcttgtgtgaaaatgga-----agt--agcc-atattgactaactaatcctcttatatgcagATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTTCAACACACTGTATTCCATCGGCAATGTCTGATGATCTTAAGTCATGAT
        ||    || | || | ||| | |||| | | ||    |  ||| ||      |||   ||  | |||   ||||||||       |   ||||| || || |||   || || ||||| || || || || |  || |||||  ||||||||||||| || ||||||||||||||||| || ||| | | ||
agaatcatgtgtttttactattcctccattttttctatcctgcgattcaaaggggcccttagtttggctgacattacttaactaatgtatgatttgacagATTGTTGTCCTTGAGACAAAAACTGCGAAGGCTGCGACACAGGACATTCTGACAACACACTGTATACCGTCGGCAATGTCTGATGACCTGAAGACCTAAT

upper sequence: GLYMA17G09970.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv17s0000g07900.t01 (Vitis vinifera), 3'ss of exon 8
gttcacttgccatccttccctgt-tttatgtgcttgtgtgaaaatgga---agtagccatattgactaactaatcctcttat-atgcagATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTTCAACACACTGTATTCCATCGGCAATGTCTGATGATCTTAAGTCATGAT
|| | ||  |  ||  ||  | | | ||| |  || |    | |  ||   | ||    | |    ||     |  | ||   |||||||||||||| ||| | || |||||||| |||||||| ||  | || |||||| |||||||||| || || ||   ||||||||||||||||||| ||||| 
gtcctctctctctctctctatctatctatcttgttctcaacacaccgactcactatttttttctgttactctgtgtttttgcgatgcagATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTTACAACACACTGCATACCTTCAAAAATGTCTGATGATCTTAAGACATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964168|gb|BM270907.1|BM270907
EST:     TAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAG                         ATAGTGGTGCTT
genomic: TAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAGgttcacttgc ... ttatatgcagATAGTGGTGCTT
EST: gi|6481804|gb|AW201075.1|AW201075
EST:     TAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAG                         ATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTT
genomic: TAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAGgttcacttgc ... ttatatgcagATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgtgtgaaaatggaagtagccatattgactaactaatcctcttatatgcagATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTTCAACACACTGTATTCCATCGGCAATGTCTGATGATCTTAAGTCATGAT
                                        tcctcttat  CT-rich tract
                                 taactaat  TA-rich tract