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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttacttagttttaaatgtaatttttgtggttcatgattgttttgcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG

Basic information

species Glycine max
transcript GLYMA17G07760.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07760.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G040945_T01 (Zea mays), 3'ss of exon 7
ccttacttagttttaaatgtaatttttgtggttcatgattgttttgcacttttcatttct-ggacataatttcc-ttgagtttattcttgaat--gttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
  ||| |     |  ||||||   | |  |  | ||   ||      | ||||  || ||   | ||  | | | |||| | | |||   | |  ||||   ||||    |    |  | || | || |||| ||||||||||||||||||||||||  |||| |||||||||   || ||||  || || || |||||| |
--ttattccaaatagaatgtagcatgtcagcgtaata--tgaaaaatatttttgcttactcaaatattctctgcattgactattttcacaatttggttgggcagGACCAACATTTTGATGGAAATTCCTGGAGGGAACTGTTTGATGTTGTGATTGCGCAGGCAAATAAACCAACTTTCTATAACTCAGATCACCCATTCAG

upper sequence: GLYMA17G07760.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G23890.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------------------------------------------------ccttacttagttttaaatgtaatttttgtggttcatgat-tgttttgcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
                                                                                        ||| |||||| |  ||    || ||  ||    |    | ||||    |||| |  |  |  ||| |  |   |  | || | ||| | ||||  |||||| ||| | |  |   |||| || |||   ||||| |||||||||||||||||||| || ||||||||| | ||||| ||||||||||| || |||||
gtaattcacattattgaatagatctaaaactcttttattttctcgttggaatatcactagggacaatcatttcaacactttttttattttaattagttgtccataatcttcttacggccagttccatatttttttttttttaagtg-gttcatgacctttattgggttgtgctt-attgttcgttagGAATCTTTTGGCTTCGGAGATTCCTGGCGAGAACTCTTTGATGTTGTGATTGCTAAAGCAAATAAACCAGAATTTTACACATCTGAGCACCCTTTCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
                 acataattt  TA-rich tract