1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaccagctatccatttagtttggactttgcttggaagatattcaatttcatgagaatttggtatttatgatgtgtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATT
species | Glycine max |
transcript | GLYMA17G07040.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTTGCTTCAG AAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATEST: gi|192322486|gb|FK014967.1|FK014967
genomic: AATTTGCTTCAGgtaccagcta ... gtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGAT
EST: AGAAGAAGAAAGAGTCTAGGTCAG-CATGGAGATAATGAATTTGCTTCAG AAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATEST: gi|208120354|gb|GD918819.1|GD918819
genomic: AGAAGAAGAAAGAGTCTAGGTCAGGCATGGAGATAATGAATTTGCTTCAGgtaccagcta ... gtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGAT
EST: AATTTGCTTCAG TEST: gi|208120354|gb|GD918819.1|GD918819
genomic: AATTTGCTTCAGgtaccagcta ... gtgtaaacag-
EST: AATTTGCTTCAG T
genomic: AATTTGCTTCAGgtaccagcta ... gtgtaaacag-
gcttggaagatattcaatttcatgagaatttggtatttatgatgtgtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATT
aagatattcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccagctatccatttagtttggactttgcttggaagatattcaatttcatgagaatttggtatttatgatgtgtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA