1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taaattactgtttggttaatttttgtttgttgttaattgcatttgatgcttcatttgtatctaatttttttaatcttttaatgtttccccaacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGACTTCAGATTCGAGAAGTGTCGTGGA
species | Glycine max |
transcript | GLYMA17G05530.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGGATGCTCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|193616957|gb|FK571627.1|FK571627
genomic: CAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: CAGGATGCTCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|193490170|gb|FK455505.1|FK455505
genomic: CAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: TCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|208052705|gb|GD850028.1|GD850028
genomic: TCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: ATGCTCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|193500769|gb|FK464566.1|FK464566
genomic: ATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: TCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|193632381|gb|FK584191.1|FK584191
genomic: TCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: CTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|208150143|gb|GD950790.1|GD950790
genomic: CTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: CAGGATGCTCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGEST: gi|21637806|gb|BM107961.1|BM107961
genomic: CAGGATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: GATGCTCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAARGGGEST: gi|193624299|gb|FK573395.1|FK573395
genomic: GATGCTCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: TCAAAGTGCTATAAATGATTTGACTG GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: TCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
atgcttcatttgtatctaatttttttaatcttttaatgtttccccaacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGACTTCAGATTCGAGAAGTGTCGTGGA
ttttaat putative branch site (score: 3)
tttcccca CT-rich tract
tcatttgtatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattactgtttggttaatttttgtttgttgttaattgcatttgatgcttcatttgtatctaatttttttaatcttttaatgtttccccaacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGACTTCAGATTCGAGAAGTGTCGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -ctgtttg
- - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc