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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatagaatgtcacaaacgatttaacgttggctttatctgctttgtagttgaacaataaatgtgatcatttacattttttatcttttaatttagGTATGTTGAAAACAATCCACAGTATGCAGAATCTAGTGTTTACTTGCTTAAATTTCGGCAACTCCAG

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 3'ss of exon 8
gtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatagaatgtcacaaacgatttaacgttggctttatctgctttgtagttgaacaataaatgtgatcat-ttacattttttatcttttaatttagGTATGTTGAAAACAATCCACAGTATGCAGAATCTAGTGTTTACTTGCTTAAATTTCGGCAACTCCAG
                                                        ||    || | | || ||    |  ||  | ||  |     || | |||  | | || | | ||||  |  ||  | | |   |   | ||||||||||||||| |||||||| ||||| ||||||   || |||||| |||| ||||| ||||| |||
-------------------------------------------------------gtaagtagtaatagacaat---gctctgtgtgtagttttagggt-gctgag-atttaaggagttcatgctgtatcctgtttgggtgcttatagGTATGTTGAAAATAATCCACAATATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAG

upper sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM5G825854_T02 (Zea mays), 3'ss of exon 8
gtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatag-aatgtcacaa-acgatttaacgttggctttatctgctttgtagttgaacaataaatgtgatcatttacattttttatcttttaatttagGTATGTTGAAAACAATCCACAGTATGCAGAATCTAGTGTTTACTTGCTTAAATTTCGGCAACTCCAG
                                                   ||   ||| ||   || |  |   ||| | ||| | ||    | ||  ||  ||  | |   ||||  |       |||    | |   | | |  ||||||||||||||||| || || ||||| ||||||  |||||| ||| | |||||||| ||||| || 
---------------------------------------------------gtaagtagtaactgcatagtaaagttttatgtttggttctagtactaagt--ttccagagctaatgcaa-------catcccctgttgctgattgcagGTATGTTGAAAACAACCCGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA

upper sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 9
----------------------gtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatagaatgtcacaaacgatttaacgtt--ggctttatctgctttgtagtt-gaacaataaatgtgatcatttacattttttatcttttaatttagGTATGTTGAAAACAATCCACAGTATGCAGAATCTAGTGTTTACTTGCTTAAATTTCGGCAACTCCAG
                      ||   |        |  |    |   |  ||   |   ||   |||||| | | |  |  ||  |   ||  | |     ||  |    ||     | ||||||| ||| |||     | ||| ||||  ||||||| | |     ||||||||||||| | ||||||||||||||||||||| |||||||||||| | || ||  | |||||||||
gtaagtgtatttttttaaattagtcctttgtggataatctatggttctgagctagcttttttaaccatgctgattattaatgataccgacaatcactggcttttatgagaatacagtttctgtagtttgaaaaattttccttatc-tttattttttttaccat---gcttagGTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAAGTTCAGACAACTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgtagttgaacaataaatgtgatcatttacattttttatcttttaatttagGTATGTTGAAAACAATCCACAGTATGCAGAATCTAGTGTTTACTTGCTTAAATTTCGGCAACTCCAG
                                            ttttaat  putative branch site (score: 3)
                                 cattttttatctttt  CT-rich tract
               aataaatgtgatcatt  TA-rich tract