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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcttcattttcattgcttccatgcattatttactttcctcaaacctgtcatggaactgaattgtctttccatgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAG

Basic information

species Glycine max
transcript GLYMA17G04460.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04460.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g00750.t01 (Vitis vinifera), 3'ss of exon 8
gttgcttcattttcattgcttccatgcattatttactttcctcaaacctgtcat--ggaactgaattgtctttccatgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAG
  || |  |||||   || ||||||||   |||||| ||||    |  | || |    |||| ||    |    ||| ||  ||||| ||||| || || ||||| |||||||| || || |||||||| ||||||||||| ||||||||  | ||||||
-gtg-tgtattttttctgattccatgctcaatttacattccatttatttctcgtttataactaaac--cccaaacat-tttccagGTGGCTACGGATAAATGCATAATGCTTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329340|gb|FK021822.1|FK021822
EST:     TTAAGGAGATTGGTAGACAG                         GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
genomic: TTAAGGAGATTGGTAGACAGgttgcttcat ... atgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
EST: gi|192329339|gb|FK021821.1|FK021821
EST:     AGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAG                         GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
genomic: AGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAGgttgcttcat ... atgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
EST: gi|9820251|gb|BE555761.1|BE555761
EST:     AGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAG                         GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
genomic: AGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAGgttgcttcat ... atgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttactttcctcaaacctgtcatggaactgaattgtctttccatgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAG
                                      tctttccat  CT-rich tract
                                             atgttat  TA-rich tract