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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttcttcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCTGGTTGTTGTGGTGTCCTTTGTGGTACTAAATGGTATATCACAGGTGGTG

Basic information

species Glycine max
transcript GLYMA17G02680.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02680.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G18590.2 (Arabidopsis thaliana), 3'ss of exon 10
gtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttcttcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCTGGTTGTTGTGGTGTCCTTTGTGGTACTAAATGGTATATCACAGGTGGTG
                                |  |   ||  |  |||  |||   | ||  |  ||| |||||  ||| || | ||    ||||     | |  ||  | | || ||                    ||||| ||||||| || | |||||  |||| ||||| || ||||| ||||| ||| ||||||| || ||||| ||||||||||||||||| || || || |
-------------------------------gtaatacttattgctata--atgttttttatttatttggtttcttgacattgaacat---ctctt-----atctcttggtgtcatcaa--------------------gATGGTATGGTCAAGAATAAAGATAAGAGGATTTCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAACCGGAGGAG

upper sequence: GLYMA17G02680.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtgagctctgtaggtccaaatgtgtcaatggtctatacagaaataacatgcagtataactgcttgatttctccacagtgcaaatgaattcttcataaaccatttaatttgataaaaatatatatatatttct-tcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCTGGTTGTTGTGGTGTCCTTTGTGGTACTAAATGGTATATCACAGGTGGTG
                        | |||  |    | || |      |   |   ||  |||  ||| ||||||  | | ||   |||||  |||       ||||  | |||||    |||| |  || ||| | |||||||  ||||||| || | |||| |  | |      ||| ||||||||||||||||||||||| ||  | ||||| ||||||||||||||  |||| ||||
-----------------------gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttct--ataatg---atgaaaacttacatcttcatt--agttgattttgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633300|gb|DW246702.1|DW246702
EST:     CATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACT                         ATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCT
genomic: CATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTgtgagtgagc ... atttcttcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaattcttcataaaccatttaatttgataaaaatatatatatatttcttcagATGGCATGGTCACGAGTGAAGATGCGAGGTTTTCATCCGTCACCTAGAGCTGGTTGTTGTGGTGTCCTTTGTGGTACTAAATGGTATATCACAGGTGGTG
                                            tatttcttc  CT-rich tract
         ttcataaaccatttaa  TA-rich tract