Sequence
atgc intronic sequence ATGC exonic sequencegtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
Basic information
species | Glycine max |
transcript | GLYMA17G02640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 3'ss of exon 8
gtaagccttgaagcttcttcattgttaag-ggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
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gtaacagatttgatatccatattctcaattgatagatcatgttggttttccttgtatgatttgtgtaacatgttacacttga---agGTTCTTCGTCCATTTCTGCTTCGGAGGCTTAAATCTGATGTTGAGAAAGGTTTACCACCAAAAAAGGAAACTATACTTAAAGTTGGAATGTCTGAGATGC
upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttc-tgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
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gtatggatgca--cccattccttgcattgagtttattctgttctg-tgt-gagtcgtaggttaattgctttcatgtatctt-tttagGTTCTTCGACCATTTCTTCTTCGAAGACTAAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAGAAGGAGACCATACTTAAAGTTGGTATGTCTCAGATGC
upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
gtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
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gtaaaccc-aagacctcctaattttttagc-tctacc-ttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ32950 (Selaginella moellendorffii), 3'ss of exon 7
gtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
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-----------------------------------gtatgaatgagcgctatgcgctatcgtcgatgctgataatgatttac--agGTGTTGCGGCCTTTCCTTTTGCGAAGGTTGAAGTCAGATGTTGAAAAGGGGCTGCCTCCCAAGAAGGAAACAATCCTCAAGGTTGGCATGTCAAAAATGC
upper sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ15818 (Selaginella moellendorffii), 3'ss of exon 7
gtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
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-----------------------------------gtatgaatgagcgctatgcgctatcgtcgatgctgataatg-attttacagGTGTTGCGGCCTTTCCTTTTGCGAAGGTTGAAGTCAGATGTTGAAAAGGGGCTGCCTCCCAAGAAGGAAACAATTCTCAAGGTTGGCATGTCAAAAATGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208261822|gb|GE059589.1|GE059589EST: GGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAG GTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGT
genomic: GGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGgtaagccttg ... tgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
ataaaatgttgtataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA