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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttgatgtgttatattaattgatattggagttttgaaattgcaactcacatccattgctcttatgtttttcttgtaaaattagATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTAAATGAAGGGAGTGCCAC

Basic information

species Glycine max
transcript GLYMA17G01610.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335625|gb|CO979491.1|CO979491
EST:     TATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAG                         ATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTA
genomic: TATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGgtgtgttgat ... gtaaaattagATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgaaattgcaactcacatccattgctcttatgtttttcttgtaaaattagATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTAAATGAAGGGAGTGCCAC
              aactcac  putative branch site (score: 2)
                                     tttttcttgt  putative PPT
                                ttatgtttttcttgta  TA-rich tract