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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttcaaccatttcaatgaggtttctctctcgttttttttcttttttatatatccttttaatcttccttggtttattaaatttgctattttgttctatttaacctgaattctcagTGACGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGTACAAATTTTGCAATCTT

Basic information

species Glycine max
transcript GLYMA16G32830.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 7
gtgagtatttcaaccatttcaatgaggtttctctctcgttttttttcttttttatatatccttttaatcttccttggtttattaaatttgctattttgttctatttaacctgaattctcagTGACGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGTACAAATTTTGCAATCTT
                  | | |||  || ||  || ||| |  |   |||  ||   |  ||  |||     || |||||||       ||   ||  | | ||||   ||  || ||||||| || |||||||||||| ||||||| || || ||||| ||||| || ||||||||||  |||| |||| |
-----------------gtgagtgatattacttccttgttatgctatctttgcattggtttttcaaatggatgtttgtttattgtgaa-actgcatttatttgtttacattg--ttttcagTGATGTAAGAGGCAATAATCTGACTGGAACAATCCCTGATAGCATCGGTAACTGTACAAGCTTTGAAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttccttggtttattaaatttgctattttgttctatttaacctgaattctcagTGACGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGTACAAATTTTGCAATCTT
                                    atttaac  putative branch site (score: 3)
                                                ttctc  putative PPT
           tttattaaatttgcta  TA-rich tract