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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattcgtccttctgactttctgagtatgcaagctgagacctcaatttgatttctttgttttgaactgatgattgatccccgccctcttttttcgctgttcttgacaaatgttatgataatcttctgatgacacgaaacaactgtctttgcttcacagACATCTCTAGAAGGTGCAGTGCGTGTTTGGTTCAAAAGCTTCCGAAGAAAACTTAAAAAAATATATATTTTTTTTCAACTTTAATCTTTACCAGACATGG

Basic information

species Glycine max
transcript GLYMA16G32510.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011422|gb|BG726344.1|BG726344
EST:     AACTTGTGAATAGGATATTTTCATATGGAAGATCAGATCAATTCATCAAG                         ACATCTCTAGAAGGTGCAGTGCGTGTTTGGTTCAAAAGCTTCCGAA
genomic: AACTTGTGAATAGGATATTTTCATATGGAAGATCAGATCAATTCATCAAGgtagattcgt ... tgcttcacagACATCTCTAGAAGGTGCAGTGCGTGTTTGGTTCAAAAGCTTCCGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaaatgttatgataatcttctgatgacacgaaacaactgtctttgcttcacagACATCTCTAGAAGGTGCAGTGCGTGTTTGGTTCAAAAGCTTCCGAAGAAAACTTAAAAAAATATATATTTTTTTTCAACTTTAATCTTTACCAGACATGG
                   ttctgat  putative branch site (score: 3)
                                         tctttgcttc  putative PPT
        ttatgataat  TA-rich tract