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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaactggaatatatgaaccataaaagtacgtggccatttttaaattaatgtatttgaatcctaacttttttgttctctgaatttgttattctgtgccagTTTTGTTGATGAAGTTGCCAGGGAAACCCTTGCACCATATGCATCCTTATCTGGTGATGAGAGTTATCAAAGTCGTGATCTTGAAAAG

Basic information

species Glycine max
transcript GLYMA16G32480.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733988|gb|BM527922.1|BM527922
EST:     CAGAAAAGTTTTGGCCGACTATACTTCAATGACTTCTTGAGAAATGCCAG                         TTTTGTTGATGAAGTTGCCAGGGAAACCCTTGCACCATATGCATCCTTATC
genomic: CAGAAAAGTTTTGGCCGACTATACTTCAATGACTTCTTGAGAAATGCCAGgtttgtgtat ... tctgtgccagTTTTGTTGATGAAGTTGCCAGGGAAACCCTTGCACCATATGCATCCTTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgtatttgaatcctaacttttttgttctctgaatttgttattctgtgccagTTTTGTTGATGAAGTTGCCAGGGAAACCCTTGCACCATATGCATCCTTATCTGGTGATGAGAGTTATCAAAGTCGTGATCTTGAAAAG
              tcctaac  putative branch site (score: 1)
                                         ttattct  putative PPT
                                   aatttgttatt  TA-rich tract