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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatatataattttatctatacagtgcaacattcttgcgaggaatagtataccttttgacatacaatattgttgttagGAGCCCTTGTTGAATGGAGTTGCACCTGGCGCACAAATAATATCTTGTAAAATTGGGGATTCTCGCTTAGGTTCAATGGAAACAGGAACGGGTTTGATTC

Basic information

species Glycine max
transcript GLYMA16G30190.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0050g00510.t01 (Vitis vinifera), 3'ss of exon 1
-----gtactgatatataattttatctatacagtgcaacattcttgcgagga------atagtataccttttgaca------tacaatattgttgt-tagGAGCCCTTGTTGAATGGAGTTGCACCTGGCGCACAAATAATATCTTGTAAAATTGGGGATTCTCGCTTAGGTTCAATGGAAACAGGAACGGGTTTGATTC
      || | || | || |||| | || | |  |     |||     |  |      ||  | ||| |||  | |      |  || ||  ||||  ||||||| ||||||||| |||||||| |||| ||||| || ||||||||||||||||| || || ||| |||||||||||||||||||||| || ||||   
taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatttgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA

upper sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 8
----------------gtactgatatataat--tttatctatacagt------gcaacattcttgcgaggaatag-tataccttttgacatacaatattgttgt-tagGAGCCCTTGTTGAATGGAGTTGCACCTGGCGCACAAATAATATCTTGTAAAATTGGGGATTCTCGCTTAGGTTCAATGGAAACAGGAACGGGTTTGATTC
                 | |  | |||  ||  | |||   | || |      |||    | ||    | || |  | |||||||||| |||    ||||||||  |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||| ||||||||||||||||||| || || ||||   
gtaatatgctattaacattcgaaaatagcatactctattcctgcattattcctgcatttcttttatacgaaacaaatttaccttttgaaatatgccattgttgtacagGAACCATTGTTGAATGGAGTTGCACCTGGAGCACAAATAATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGGACAGGCTTGACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcaacattcttgcgaggaatagtataccttttgacatacaatattgttgttagGAGCCCTTGTTGAATGGAGTTGCACCTGGCGCACAAATAATATCTTGTAAAATTGGGGATTCTCGCTTAGGTTCAATGGAAACAGGAACGGGTTTGATTC
                              ttttgac  putative branch site (score: 3)
                                     atacaatatt  TA-rich tract