1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atacagaagcaggggtacaggttgaatatgtgaaaatagtgcaattgtttcatttttattatcgagccaaaaaacaattattaaatttattttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAAGCCACTATACCAGGTGGTAAAATGCCACCTAACATTGGTCAAGTGTTG
species | Glycine max |
transcript | GLYMA16G28980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAA GTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAEST: gi|57575505|gb|CX548480.1|CX548480
genomic: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAgtaagtaaat ... tttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
EST: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAA GTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAEST: gi|298178500|gb|HO024235.1|HO024235
genomic: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAgtaagtaaat ... tttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
EST: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAA GTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAEST: gi|298165064|gb|HO011113.1|HO011113
genomic: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAgtaagtaaat ... tttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
EST: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAA GTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAEST: gi|57575689|gb|CX548664.1|CX548664
genomic: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAgtaagtaaat ... tttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
EST: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAA GTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAEST: gi|208176126|gb|GD978193.1|GD978193
genomic: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAgtaagtaaat ... tttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
EST: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAA GTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
genomic: CGTGAAGGTTCTGATGGAATAATGTTGTCTGGAGAAACAGCTCATGGAAAgtaagtaaat ... tttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGA
tgtttcatttttattatcgagccaaaaaacaattattaaatttattttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAAGCCACTATACCAGGTGGTAAAATGCCACCTAACATTGGTCAAGTGTTG
tttatttt CT-rich tract
aaaaaacaattattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacagaagcaggggtacaggttgaatatgtgaaaatagtgcaattgtttcatttttattatcgagccaaaaaacaattattaaatttattttactgcagGTTCCCACTAAAAGCTGTGCAAGTAATGCACACAGTAGCATTGCGGACAGAAGCCACTATACCAGGTGGTAAAATGCCACCTAACATTGGTCAAGTGTTG
- - - - gcagggg
- - - - - - - - - - - - - - - - - - -agtgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa