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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctttatgattattttctttgtgtatttatgaatcaaatcttctggttgacctttgtcaagttgtttctaattcacttcatccttcgtctcctatgaaatagCCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG

Basic information

species Glycine max
transcript GLYMA16G27970.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284482|gb|AW597072.1|AW597072
EST:     ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAA                         CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
genomic: ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAAgtatgttctt ... tatgaaatagCCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
EST: gi|61241638|gb|DN591029.1|DN591029
EST:     ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAA                         CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
genomic: ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAAgtatgttctt ... tatgaaatagCCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
EST: gi|192326435|gb|FK017707.1|FK017707
EST:     ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAA                         CCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
genomic: ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAAgtatgttctt ... tatgaaatagCCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
EST: gi|9900186|gb|BE609154.1|BE609154
EST:     ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAA                         CCTGAATATGGTGATGCAGCAGGCATGTATTCAAGAGCCAGGGCAG
genomic: ACTTCACAAACCCTAATCTGCCTACAGAGCAGAAAGGTCGATCTTCACAAgtatgttctt ... tatgaaatagCCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacctttgtcaagttgtttctaattcacttcatccttcgtctcctatgaaatagCCTGGATATGGTGATGCAGCAGGCATGTATTCAGGAGCCAGGGCAG
                  ttctaat  putative branch site (score: 2)
                        ttcacttcatccttcg  CT-rich tract
                 tttctaatt  TA-rich tract