Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatattcaaaatacttaagtacccttgcatgtttacacatttattacatgctattattctcaacacaaatgaaagctaatgtgttagtctaaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTGAAAGAAGTTCCATTCCTCCGGCCATTTCCAAGCCATTCTAACTTCATTC

Basic information

species Glycine max
transcript GLYMA16G27220.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932614|gb|BU549753.1|BU549753
EST:     GCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: GCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|209706879|gb|BW653145.1|BW653145
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|23725215|gb|BU760556.1|BU760556
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|254330365|gb|GR841630.1|GR841630
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|213602019|gb|DB981897.1|DB981897
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG
EST: gi|192299361|gb|FG990757.1|FG990757
EST:     CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAG                         AATGTAAAAAATGCTTTGTCGAAAGAAAGAGGGAGACTTTATGACCTTTTG
genomic: CTGCTGAAATTTCTGCATGTGCAGCATTGCAAAATCCTACCTATCTAGAGgtttttcttt ... aaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgctattattctcaacacaaatgaaagctaatgtgttagtctaaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTGAAAGAAGTTCCATTCCTCCGGCCATTTCCAAGCCATTCTAACTTCATTC
                                         gtctaaa  putative branch site (score: 3)
      tattattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatattcaaaatacttaagtacccttgcatgtttacacatttattacatgctattattctcaacacaaatgaaagctaatgtgttagtctaaacttacagAATGTAAAAAATGCTTTGTTGAAAGAAAGAGGGAGACTTTATGACCTTTTGAAAGAAGTTCCATTCCTCCGGCCATTTCCAAGCCATTCTAACTTCATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg