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gtttgagttgtttactcattagtagttgtattctattttataccattaactttcattcaaatggagttaatttgtttttattctctatttttcatgattttcagTTACGGGCACAAGAGCTGATGAGGAG
species | Glycine max |
transcript | GLYMA16G27050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAG TTACGGGCACAAGAGCTGATGAGGAGEST: gi|192324538|gb|FK016789.1|FK016789
genomic: GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGgtttgagttg ... tgattttcagTTACGGGCACAAGAGCTGATGAGGAG
EST: GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAG TTACGGGCACAAGAGCTGATGAGGAGEST: gi|192294341|gb|FG987270.1|FG987270
genomic: GGCCATCCATCAAGAGTATCGCGAGGTGGTTGAGAGACGCGTTTTTACAGgtttgagttg ... tgattttcagTTACGGGCACAAGAGCTGATGAGGAG
EST: GCCATCCATCAAGAGTATCGCGAGGTGGTTGAAGAGACGCGTTTTTACAG TTACGGGCACAAGAGCTGATGAGGAG
genomic: GCCATCCATCAAGAGTATCGCGAGGTGGTTGA-GAGACGCGTTTTTACAGgtttgagttg ... tgattttcagTTACGGGCACAAGAGCTGATGAGGAG
ctttcattcaaatggagttaatttgtttttattctctatttttcatgattttcagTTACGGGCACAAGAGCTGATGAGGAG
agttaat putative branch site (score: 4)
tttttattctctattt putative PPT
ttaatttgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgagttgtttactcattagtagttgtattctattttataccattaactttcattcaaatggagttaatttgtttttattctctatttttcatgattttcagTTACGGGCACAAGAGCTGATGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG