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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaaatattctcagatctttaattttgaaattgttagtactttatagtagtattatcttacttctttgtttccatttatttatttccttaatgatgcagAACTGTGGTTGAGCTTTTGGTCTGAGGTTCATTACAATTCATTGTATGAAATCCGAGGTTTGTCCACCATAACTTGATCCTTCATTAGATTTGAAACTCA

Basic information

species Glycine max
transcript GLYMA16G26640.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238797|gb|BE807685.1|BE807685
EST:     CCAAGCACCACAGCGTG                         AACTGTGGTTGAGCTTTTGGTCTGAGGTTCATTACAATTCATTGTATGAAA
genomic: CCAAGCACCACAGCGTGgtaaggccat ... aatgatgcagAACTGTGGTTGAGCTTTTGGTCTGAGGTTCATTACAATTCATTGTATGAAA
EST: gi|23063967|gb|BU578740.1|BU578740
EST:     AGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTG                         AACTGTGGTTGAGCTTTTGGTCTGAGGTT
genomic: AGACACTTGCTTCATCGAAATTATGCCACTGTACCAAGCACCACAGCGTGgtaaggccat ... aatgatgcagAACTGTGGTTGAGCTTTTGGTCTGAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtagtattatcttacttctttgtttccatttatttatttccttaatgatgcagAACTGTGGTTGAGCTTTTGGTCTGAGGTTCATTACAATTCATTGTATGAAATCCGAGGTTTGTCCACCATAACTTGATCCTTCATTAGATTTGAAACTCA
                                      tttcctta  CT-rich tract
                             atttatttatttcctt  TA-rich tract