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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcacattcattcctgattattttttttcccccttctcaattgccgagatgagttgacatttccatcaatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCCTGGAAAGCCTGTTGTCCCAATGCCAGCAACTAATCTTAACATTGGAAT

Basic information

species Glycine max
transcript GLYMA16G25600.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402272|gb|EV272085.1|EV272085
EST:     GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG                         GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: gi|23064117|gb|BU578890.1|BU578890
EST:     TANT-TGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG                         GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: gi|20448522|gb|BQ252646.1|BQ252646
EST:     GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG                         GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: gi|7924295|gb|AW830321.1|AW830321
EST:     GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG                         GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: gi|105633676|gb|DW247039.1|DW247039
EST:     ATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG                         GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: ATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
EST: gi|9565806|gb|BE475315.1|BE475315
EST:     GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG                         GAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC
genomic: GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATGgtatgcatca ... aatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcccccttctcaattgccgagatgagttgacatttccatcaatctttcagGAGCCAATGCACAGAACAATTCTGCTGGTGCTATTTCTCAATCTTCTGTGCCTGGAAAGCCTGTTGTCCCAATGCCAGCAACTAATCTTAACATTGGAAT
                             agttgac  putative branch site (score: 4)
                                               tctttc  putative PPT
                                             aatcttt  TA-rich tract