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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttttgcttataattccccccctccccccaatttttttggctcactggatttttatttatctgttttcatttccattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG

Basic information

species Glycine max
transcript GLYMA16G25450.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G149238_T02 (Zea mays), 3'ss of exon 8
gtaatatttttgcttataattccccccctccccccaatttttttggctcactggatttttatttatctgttttcat-ttccattttt--tagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG
         |   || | ||| |   |     |  |||  |   | ||   ||  |   | |||   |  ||||||  |||||| ||  ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||  | |||||  | |||   || |||||
--------gtcagttgtcatttcttgcacatgcttaataataccg-ctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATG

upper sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G149238_T03 (Zea mays), 3'ss of exon 7
gtaatatttttgcttataattccccccctccccccaatttttttggctcactggatttttatttatctgttttcat-ttccatttttt--agGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG--------------------------
         |   || | ||| |   |     |  |||  |   | ||   ||  |   | |||   |  ||||||  |||||| |||  |||||||||| ||||| ||||||||||| |||||||| ||||| |||||  | |||||  | |||   || |||||                          
--------gtcagttgtcatttcttgcacatgcttaataataccg-ctgtttgcttcactttttccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGGTATGTAGTTCTTTTTTATCATGTTT

upper sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G161418_T06 (Zea mays), 3'ss of exon 6
gtaatatttttgcttataattccccccctccccccaatttttttggctcactggatttttatttatctgt-tttcat-ttccatt--ttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG
      ||  |  | ||   | |   |     |  |||  |   |   || | | || |  |||  ||   ||||||  ||||||  || ||||||||||| ||||| ||||||||||| |||||||| ||||| || ||  | ||||| || ||||  || |||||
-----gttagtcgtcatttcttcttgcacatgcttaataataccg--ccatttgcttctcttttcccttcatttcatactccattgtttgtagGTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTACTGTCAGAGTTTAGAAAAATTCAGCAATG

upper sequence: GLYMA16G25450.3 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 3'ss of exon 8
-----gtaatatttttgcttat------aattccccccctccccccaatt---tttttggctca--ctggatttttatttatctgt-----tttcatttccattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG
     || |||| |||| || |      |||||      ||  ||| |||   ||||    |    ||||||  | | |||  ||      ||| || |||    || |||||||||||||||| || || || ||||| |||||||| || || |||||||||||| |||| |||||||||||
gtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcagGTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207777564|gb|GD746643.1|GD746643
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208062592|gb|GD860697.1|GD860697
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208281131|gb|GE079733.1|GE079733
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193614819|gb|FK562829.1|FK562829
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|207832751|gb|GD803567.1|GD803567
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208226429|gb|GE023138.1|GE023138
EST:     AAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGTCCTTTGAAAACATATATCCCGTGCTTAC
genomic: AAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTG-CCTTTGAAAACATATATCCCGTGCTTAC
EST: gi|193570275|gb|FK526228.1|FK526228
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193394019|gb|FK358556.1|FK358556
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193656727|gb|FK603759.1|FK603759
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193690033|gb|FK634064.1|FK634064
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208332947|gb|GE130360.1|GE130360
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208249868|gb|GE048711.1|GE048711
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|207684739|gb|GD666714.1|GD666714
EST:     TAGTTTTACTTATATTTGTCTCTGG-AAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193717026|gb|FK649894.1|FK649894
EST:     TATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACNCTGCCTTTG-AAACATATATCCCGTGCTTACT
genomic: TATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208228659|gb|GE023253.1|GE023253
EST:     AAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: AAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193547846|gb|FK504679.1|FK504679
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208030678|gb|GD831166.1|GD831166
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193650388|gb|FK598115.1|FK598115
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACC
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193705794|gb|FK643604.1|FK643604
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|207782140|gb|GD753711.1|GD753711
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|207788728|gb|GD761644.1|GD761644
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193494312|gb|FK462752.1|FK462752
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|254320724|gb|GR827173.1|GR827173
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193598761|gb|FK554129.1|FK554129
EST:     GTTTTGCTTTATTATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: GTTTTGC-TTA-TATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208332302|gb|GE126523.1|GE126523
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208122006|gb|GD917643.1|GD917643
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208074510|gb|GD868231.1|GD868231
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACNTATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193311605|gb|FK275515.1|FK275515
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTA
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTA
EST: gi|208023460|gb|GD821680.1|GD821680
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193449544|gb|FK416467.1|FK416467
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACATTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193570425|gb|FK525370.1|FK525370
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193706474|gb|FK646714.1|FK646714
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193410389|gb|FK380240.1|FK380240
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193401050|gb|FK370105.1|FK370105
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|208111655|gb|GD911921.1|GD911921
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT
EST: gi|193497917|gb|FK458713.1|FK458713
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACC
genomic: TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaatatttt ... cattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttttttggctcactggatttttatttatctgttttcatttccattttttagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATG
          ggctcac  putative branch site (score: 3)
                               tctgttttcatttcca  putative PPT
                    atttttatttatctgt  TA-rich tract