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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctcaaactagctgcaaattctaagttcttcggcacctacacttgccattaatttatagcatctgctaatatgaaccagGAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCT

Basic information

species Glycine max
transcript GLYMA16G25390.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25390.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 9
-----------------------------------------------gtacattctcaaactagctgcaaattctaagttcttcgg-cacctacacttgc-cattaatttatagcatc----tgctaatatgaaccagGAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCT
                                                 | ||| | | || |   | ||    | |  |  ||   |   |  | |||    || ||||  | |||     || |    |||  |||||||| || ||  |  || |||| |||||||||||| | ||||| |||||| ||||||||||||| |||
gtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattataccaa--gaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacagGAATTTGTACCTGAAAATGTCCTTCCTGATGATTTTCTCCGTGCTATTAAGTACTCTGACTACAGCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398508|gb|EV268379.1|EV268379
EST:     TGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATG                         GAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAG
genomic: TGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATGgtacattctc ... tatgaaccagGAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttcggcacctacacttgccattaatttatagcatctgctaatatgaaccagGAATTAGTGCCCAACGATATCCTCCCTGATGATTTTGTTCGTGCCATTAAGCACTCTGACTACAGTTCT
                                       tgctaat  putative branch site (score: 2)
                       attaatttatagcat  TA-rich tract