Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accaagatttaaaatgtttgtcattagtcacatgtaataaatgtggattcattcctcttctttttttataacaaaataagctgggtgatgcttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTC

Basic information

species Glycine max
transcript GLYMA16G25380.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193496679|gb|FK462405.1|FK462405
EST:     AGGTTTGATGCTGGAACATCCTACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: AGGTTTGATGCTGGAACATCC-ACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|193497482|gb|FK458306.1|FK458306
EST:     GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|208297974|gb|GE093231.1|GE093231
EST:     GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|193456502|gb|FK421806.1|FK421806
EST:     AGGTTTGATGCTGGAACATCCTACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: AGGTTTGATGCTGGAACATCC-ACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|192321595|gb|FK013939.1|FK013939
EST:     GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|193583802|gb|FK543786.1|FK543786
EST:     AGGTTTGATGCTGGAACATCCTACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: AGGTTTGATGCTGGAACATCC-ACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|192321596|gb|FK013940.1|FK013940
EST:     GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|208179152|gb|GD974513.1|GD974513
EST:     GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: GAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
EST: gi|193638143|gb|FK586637.1|FK586637
EST:     AGGTTTGATGCTGGAACATCCTACTGACATTGCCCTTTGTGGACGCAGTA                         GTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA
genomic: AGGTTTGATGCTGGAACATCC-ACTGACATTGCCCTTTGTGGACGCAGTAgtaagttatc ... cttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcattcctcttctttttttataacaaaataagctgggtgatgcttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTC
                    ttataac  putative branch site (score: 2)
          tcttctttttttataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
accaagatttaaaatgtttgtcattagtcacatgtaataaatgtggattcattcctcttctttttttataacaaaataagctgggtgatgcttgtggtagGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - tgtttgt
- - - - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg