1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaacctctctacatacactgttcactttgcttcatgaaatagtggttagtgtttaccaacatttagtcccagtttggaatattgtactggaatatgcagGTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAGGAGTTCATGGGTTTTATGGGGCTTCAAGTATGGAAAGACTTCCAGTGGA
species | Glycine max |
transcript | GLYMA16G24730.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATGCAGCACATAGGATCAATCCTGGTGTCATCGTGTTGTGCCATGGAG GTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAGEST: gi|31460973|gb|CD403001.1|CD403001
genomic: AGATGCAGCACATAGGATCAATCCTGGTGTCATCGTGTTGTGCCATGGAGgtatgaaagt ... gaatatgcagGTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAG
EST: AGATGCAGCACATAGGATCAATCCTGGTGTCATCGTGTTGTGCCATGGAG GTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAG
genomic: AGATGCAGCACATAGGATCAATCCTGGTGTCATCGTGTTGTGCCATGGAGgtatgaaagt ... gaatatgcagGTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAG
gttagtgtttaccaacatttagtcccagtttggaatattgtactggaatatgcagGTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAGGAGTTCATGGGTTTTATGGGGCTTCAAGTATGGAAAGACTTCCAGTGGA
aatattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacctctctacatacactgttcactttgcttcatgaaatagtggttagtgtttaccaacatttagtcccagtttggaatattgtactggaatatgcagGTCCAATATCTGGTCCAAAAGAGGCAGCATTTGTATTGAAGAGAACCAAAGGAGTTCATGGGTTTTATGGGGCTTCAAGTATGGAAAGACTTCCAGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - cctctct
- - - - - - catacac
- - - - - - - - - -tgttcac
- - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - -gttagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtccca