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gtacagtactttattgtgtaattttctgattttctaatttatatggtattcgttatccattcttgtatcttaatgacatgataagtctatgacctttactttaattgtccacttgattttgagtttttactaaggaatttgtaatgttttttgttgttgtgtataattaatgatctgatctgatatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGG
species | Glycine max |
transcript | GLYMA16G23870.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193718228|gb|FK653036.1|FK653036
genomic: CGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: ACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193682134|gb|FK622910.1|FK622910
genomic: ACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: CCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193573663|gb|FK528351.1|FK528351
genomic: CCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: TTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|207843720|gb|GD813905.1|GD813905
genomic: TTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: CGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTCTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193546146|gb|FK502323.1|FK502323
genomic: CGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: ACGCCCA-TTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|208072384|gb|GD872738.1|GD872738
genomic: ACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|208176277|gb|GD978568.1|GD978568
genomic: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|208183682|gb|GD982898.1|GD982898
genomic: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193631037|gb|FK579088.1|FK579088
genomic: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: ACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193567952|gb|FK526529.1|FK526529
genomic: ACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: ACTGAGGATGGTATCTTCAAGGAG G-CTTACGTAAGAAGCCCGA-TTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|193544365|gb|FK500310.1|FK500310
genomic: ACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: ACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTEST: gi|208035511|gb|GD837255.1|GD837255
genomic: ACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGT
EST: GCGGAAGGCGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAG GTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCAT
genomic: GCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGgtacagtact ... atatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCAT
tttgtaatgttttttgttgttgtgtataattaatgatctgatctgatatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGG
ttgtgtataattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtactttattgtgtaattttctgattttctaatttatatggtattcgttatccattcttgtatcttaatgacatgataagtctatgacctttactttaattgtccacttgattttgagtttttactaaggaatttgtaatgttttttgttgttgtgtataattaatgatctgatctgatatatgcagGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC