1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagtttggtgagagtgattggtaccgtacttgcatttttcttttccttcaaaatcatctgaattaaattgtctgatatttcattagtcacatggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACTCAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGC
species | Glycine max |
transcript | GLYMA16G19540.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAG AAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACTEST: gi|9204527|gb|BE330751.1|BE330751
genomic: AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGgtattgttat ... atggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT
EST: AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAG AAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT
genomic: AAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGgtattgttat ... atggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACT
cttcaaaatcatctgaattaaattgtctgatatttcattagtcacatggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACTCAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGC
gtctgat putative branch site (score: 4)
atctgaattaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttggtgagagtgattggtaccgtacttgcatttttcttttccttcaaaatcatctgaattaaattgtctgatatttcattagtcacatggcaacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACTCAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -tttggtg
- - - - - - -gtgattg
- - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - catctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg