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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaaagggcagcagaaagtttcctacaatatgttattgattgtggaacatacgcattcatttctgaataatatttttcttgaattatcacgtttgtcagGTTGTTAGAGCTTTGGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATGAGAATTGGGGACTCTGCACTCCAATCCGCAGAAATAAGATTATTTCGTA

Basic information

species Glycine max
transcript GLYMA16G19520.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343882|gb|CO984615.1|CO984615
EST:     CTGCTGCTTGCGTGCGATATTCGTCTGCCAAAAGACCTCGAATGGGACAG                         GTTGTTAGAGCTTTGGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATG
genomic: CTGCTGCTTGCGTGCGATATTCGTCTGCCAAAAGACCTCGAATGGGACAGgtaatgaaag ... cgtttgtcagGTTGTTAGAGCTTTGGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacatacgcattcatttctgaataatatttttcttgaattatcacgtttgtcagGTTGTTAGAGCTTTGGATAGTTTAGCTACTTGTGATCTTTCAAATGGAATGAGAATTGGGGACTCTGCACTCCAATCCGCAGAAATAAGATTATTTCGTA
              atttctgaataatatt  TA-rich tract