1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaagcatttgtatatgctctggtagaggctggacctgaaaggtatatctcttaaaatgcttctgagtcctaattactattgcaaactattgtttttgaagGTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGAGGTTGCCATTAGGGGAAAGTTACTG
species | Glycine max |
transcript | GLYMA16G19350.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTG GTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGEST: gi|10234037|gb|BE802925.1|BE802925
genomic: GGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: GGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTG GTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGEST: gi|7030141|gb|AW459924.1|AW459924
genomic: GGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: GGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTG GTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
genomic: GGCAACCTTGACTGGGGCCTGCGTTGTTGCCCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
atctcttaaaatgcttctgagtcctaattactattgcaaactattgtttttgaagGTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGAGGTTGCCATTAGGGGAAAGTTACTG
tcctaat putative branch site (score: 2)
ttgttttt putative PPT
aaactattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcatttgtatatgctctggtagaggctggacctgaaaggtatatctcttaaaatgcttctgagtcctaattactattgcaaactattgtttttgaagGTGTGTTTACACCCAGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGAGGTTGCCATTAGGGGAAAGTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- -gcatttg
- - - - - - tatgctc
- - - - - - - - - - - - gaggctg
- - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaac