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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgtaatttgttctttcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os06g03760.3 (Oryza sativa), 3'ss of exon 7
gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgtaatttgttcttt-catcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
                                 |  | || |||  | ||  |  | |   |   ||  |||| ||     ||   |     ||||      | |||| | |  || |||||| ||||| |||||||| |||||||| ||||| ||||| || ||| | || ||||||||||| |  |||||||| ||  ||| | |||||||||| ||
--------------------------------gtatatttctgttcattacattgttctgaactcgtcctattgatgacagtagcttgaccaatat------tctgttttctgtattagGTCTGCTTGGGACTGCTGCCTTTGCATTCTTCTGTTTCTATCTCCTCATAGCAGTGATTGCTGGGGAAATGATGCTGGGTTTGAAATTAGTTTTCATCAC

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G012284_T01 (Zea mays), 3'ss of exon 7
gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgtaatttgttctttcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
                    ||| ||    || | || |  |||     || | || | |  |  |    |   ||||| |||||||   |||| ||||||              ||||||| ||||| |||||||| || ||||| ||||||||||| |||||  |||| ||||||||||| |  |||||||||||| |||  |||||||| || ||
-------------------gtatcttctgatcttccattcttgt----caacttatgc-tgctgagccgaacaaattcaattaatcttc-tgatttatgta-------------ccagGTCTGCTTGGGACTGCTGCTTTCGCATTCTTCTGCTTCTATCTTCTTATTGCAGTGATTGCTGGGGAGATGATGCTTGGATTGAAGCTAGTTTTTATCAC

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM5G871262_T02 (Zea mays), 3'ss of exon 9
gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgtaatttgttctttcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
                          | | | ||  | |    | |   | |     ||   ||||   |  | ||      |||| |  | || | | ||||||||      | ||||||| ||||| |||||||| || ||||| ||||||||||| || ||  |||| ||||||||||| |  |||||||||||  ||| ||| |||||||| ||
-------------------------gtatcttctgaattctcatcttccagtcttgtcaacttatg--gtgctgatgagaacaatccaattaatct-tctaatttgtgt----accagGTCTCCTTGGGACTGCTGCTTTCGCATTCTTCTGCTTCTATCTCCTTATTGCAGTGATTGCTGGGGAGATGATGCTTGGTTTGAAACTTGTTTTCATCAC

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgtaatttgttctttcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
        | ||| |||  || || | |||    ||     |||||||   ||  | | || | | |||   | | ||  |       | || ||  |||       ||      |||||||| | ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||| || |||||||| ||  |||  || || ||||||||
--------gtaagttcatacttttgtccttgttatc----ctgtataa-ggtttcttctttgtttctaac--tgactccat-------gctggtacgtgtggaaatctc------cagGTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTAC

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatcta-gatgatatatgtaatttgttctt--tcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
                    ||  ||  ||| ||    || | |||  || |  |||| || |   |  | |   |    |   |||  | | ||| |||| |  | |||||  |||  ||||||||||||||| ||||| ||||| || ||||| ||||| || || |||||||| |||||||| || |||||||||||  |||  || || ||||||||
-------------------gtaacttcattttctgatcttgt-tatgctactctataccttgttccttttgtgtctgacctggctctgtgttcatacatgtgacattttcttgttcactagGTCTTCTTGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTGCTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTAC

upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 9
gtatgttggaaagctcaggctatttttctttccttcagttatgtataataattgatacattatatgtaatattcattcagttaatctagatgatatatgtaatttgttctt--tcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
                              | ||  || | | |    |   || ||  |||| |      |||| | || | ||||   |   | |||||  |||| |||  || ||||||||  | || ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||| ||| |||||||||||||
--------------------------gtactgctatagatttttgctgtctctgttattttatttcc---tttcact-agatgatcttattctgagatgtatcttgtacttcttcgtcagGTCTCTTGGGTACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTGCTTGCGGTGATTGCAGGGGCAATGATGCTTGGACTTAGATTAGTTTTCATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaatattcattcagttaatctagatgatatatgtaatttgttctttcatcagGTCTTCTTGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTGCTGGTGCCATGATGCTTGGACTGAGACTAGTTTTCATTAC
               agttaat  putative branch site (score: 4)
                                       tttgttctttcatc  putative PPT
                          atgatatatgtaattt  TA-rich tract