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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcacttcattcaatcttcaagtagttaattttaactctgcttttcattgtattagacttttaaatgactacttttatcttacagCATAATGGAAGGGGAGGAATCCCTGCAACGGTTTTCTCCAGAAGTAATGATTCAAGATCCAAACATTGGAAATGCGAATTCTCTATTACCTCCTGTAGTT

Basic information

species Glycine max
transcript GLYMA16G18930.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734511|gb|BM528225.1|BM528225
EST:     GATCACTTTCATAGTAGAGGTCTTTATCGGTCCATCTTTTTAAG                         CATAATGGAAGGGGAGGAATCCCTGCAACGGTTTTCTCCAGAAGTAATGAT
genomic: GATCACTTTCATAGTAGAGGTCTTTATCGGTCCATCTTTTTAAGgtagtcactt ... tatcttacagCATAATGGAAGGGGAGGAATCCCTGCAACGGTTTTCTCCAGAAGTAATGAT
EST: gi|208184922|gb|GD984936.1|GD984936
EST:     CTAATAGATCACTTTCATAGTAGAGGTCTTTATCGGTCCATCTTTTTAAG                         CATAATGGAAGGGGAGGAATCCCT
genomic: -TAATAGATCACTTTCATAGTAGAGGTCTTTATCGGTCCATCTTTTTAAGgtagtcactt ... tatcttacagCATAATGGAAGGGGAGGAATCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaactctgcttttcattgtattagacttttaaatgactacttttatcttacagCATAATGGAAGGGGAGGAATCCCTGCAACGGTTTTCTCCAGAAGTAATGATTCAAGATCCAAACATTGGAAATGCGAATTCTCTATTACCTCCTGTAGTT
                                         cttttatctt  CT-rich tract
                    tattagacttttaaat  TA-rich tract