Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgctttgctatctcttgtttcttgttctttctgtcagcattttggaaatattgggacactaatttcggtgttctgattttagATGGTTCATAGTGTGGAGGCAACGTTTGAGAGACAAATCGCCCGAATGTCCAATGAACAACAGAATTTAGACTCTTTTTGGATATGCCCACAGAAG

Basic information

species Glycine max
transcript GLYMA16G17830.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9566139|gb|BE475648.1|BE475648
EST:     GATGTCTAAGGTCTAGCAAAGGTCCATGGAATGATCCTGATATCATGAAA                         ATGGTTCATAGTGTGGAGGCAACGTTTGAGAGACAAATCGCCCGAATGTCC
genomic: GATGTCTAAGGTCTAGCAAAGGTCCATGGAATGATCCTGATATCATGAAAgtaatgttgc ... ctgattttagATGGTTCATAGTGTGGAGGCAACGTTTGAGAGACAAATCGCCCGAATGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtcagcattttggaaatattgggacactaatttcggtgttctgattttagATGGTTCATAGTGTGGAGGCAACGTTTGAGAGACAAATCGCCCGAATGTCCAATGAACAACAGAATTTAGACTCTTTTTGGATATGCCCACAGAAG
           attttggaaatatt  TA-rich tract