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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcaagtactcacttgtaatttttccttctagctttgcaacttctttggtgttactgatgcttctgaattgttgtgtagTGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTTGTTAATTCAGCCTATGACTCGTGGCAG

Basic information

species Glycine max
transcript GLYMA16G17120.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309097|gb|FG999058.1|FG999058
EST:     CTGCAAAGAATTTGCCCACATCCTGCACTTCAAAACTCAGCCCAACACTA                         TGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTT
genomic: CTGCAAAGAATTTGCCCACATCCTGCACTTCAAAACTCAGCCCAACACTAgtaagtttca ... tgttgtgtagTGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTT
EST: gi|9900786|gb|BE609754.1|BE609754
EST:     CTGCAAAGAATTTGCCCACATCCTGCACTTCAAAACTCAGCCCAACACTA                         TGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTT
genomic: CTGCAAAGAATTTGCCCACATCCTGCACTTCAAAACTCAGCCCAACACTAgtaagtttca ... tgttgtgtagTGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTT
EST: gi|10709182|gb|BF008906.1|BF008906
EST:     CTGCAAAGAATTTGCCCACATCCTGCACTTCAAAACTCAGCCCAACACTA                         TGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTT
genomic: CTGCAAAGAATTTGCCCACATCCTGCACTTCAAAACTCAGCCCAACACTAgtaagtttca ... tgttgtgtagTGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctagctttgcaacttctttggtgttactgatgcttctgaattgttgtgtagTGCTTTTTTCCACAATATGTGGCATCACATATCAGTACCCCAATCTTCGTTGTTAATTCAGCCTATGACTCGTGGCAG
                            tactgat  putative branch site (score: 2)
 aattgtt  TA-rich tract