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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgcctttaacagtcaatgcatttggatgataaagtcctttcttgtgagtctatctattgattttactatagcaatataataaatttattttaattcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAA

Basic information

species Glycine max
transcript GLYMA16G10880.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10880.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G379271_T01 (Zea mays), 3'ss of exon 2
-----gtttgttgcctttaacagtcaatgcatttggatgataaagtcctttcttgtgagtctatctattgattttactatagcaatataataaatttattttaattcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAA
          | |     ||| |  |  |    |   |  |      |  || | |||||  |||  | ||     | || |   |    |||||| |          | | ||||| ||||||| |||||||||||||| || ||||| ||    ||||| || ||||||||||| ||||| || || ||||||||||| ||  |||||||||
gttgaagccatagaacaaaacgggta-cgtgcctccttcctgctcctccctcctctgagttcatcgctagacgactccatgggtttggcctaaattgacgacttggtcttgtagGGTTTAGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492901|gb|EH221068.1|EH221068
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|26269443|gb|CA820506.1|CA820506
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|23064172|gb|BU578945.1|BU578945
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|22522877|gb|BU081688.1|BU081688
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|209701660|gb|BW655881.1|BW655881
EST:     GGAGTTT-GGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTG-TTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|120494409|gb|EH222576.1|EH222576
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|209719035|gb|BW657927.1|BW657927
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTG-TTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|120497234|gb|EH225401.1|EH225401
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATATG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACAAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|209729823|gb|BW658628.1|BW658628
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTG-TTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|17962913|gb|BM269669.1|BM269669
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|14205385|gb|BG839063.1|BG839063
EST:     GGAGTTT-GGGYGAAAAATAACTATTGACTCTGCT-CCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|10844582|gb|BF067838.1|BF067838
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTAGTT-GGAGCAAGCTATGACGA
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTT-GTTTGGAGCAAGCTATGACGA
EST: gi|209722139|gb|BW659330.1|BW659330
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|10844694|gb|BF070942.1|BF070942
EST:     GGAGTGTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTATAAGTAATTGAAGCACATTACTTGATTGGAGCAAGCTATGA
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGA
EST: gi|15288120|gb|BI472011.1|BI472011
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9204784|gb|BE331008.1|BE331008
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|22523177|gb|BU081988.1|BU081988
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|27424376|gb|CA935896.1|CA935896
EST:     GAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|120493876|gb|EH222043.1|EH222043
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAAAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|8670132|gb|BE191239.1|BE191239
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9258778|gb|BE346925.1|BE346925
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|209728985|gb|BW651748.1|BW651748
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9205477|gb|BE331701.1|BE331701
EST:     GGAGAAAAATAACTATTGACTCTGCTACCCTTTGCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|20811436|gb|BQ295914.1|BQ295914
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
EST: gi|9205303|gb|BE331527.1|BE331527
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGGTCTAGAAAAGTAATTGAAGCACATTAC
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGG-TCTAGAA--GTAATTGAAGCACATTAC
EST: gi|8670124|gb|BE191231.1|BE191231
EST:     GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAG                         GGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT
genomic: GGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGgtttgttgcc ... ttcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatctattgattttactatagcaatataataaatttattttaattcttggcagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAA
                                       ttttaat  putative branch site (score: 3)
                                             ttctt  CT-rich tract
      tattgattttactata  TA-rich tract