1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtttgtataactaacataatagcataatatgatttatggcttgctcaaagttgtttatcttaatatactatcattatccgcatcattttaacttgcattaatcttgatgcaatttggtttctgctttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATGGAGAAAAAGTTCTTATTCAG
species | Glycine max |
transcript | GLYMA16G08460.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAG GAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATEST: gi|19453158|gb|BM954568.1|BM954568
genomic: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAGgtttgtataa ... ttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTAT
EST: CTCAGACAAAAGAGGGCAACTGGACAG GAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATEST: gi|14990386|gb|BI316059.1|BI316059
genomic: CTCAGACAAAAGAGGGCAACTGGACAGgtttgtataa ... ttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTAT
EST: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAG GAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATEST: gi|19053118|gb|BM731785.1|BM731785
genomic: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAGgtttgtataa ... ttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTAT
EST: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAG GAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATEST: gi|6341574|gb|AW164398.1|AW164398
genomic: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAGgtttgtataa ... ttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTAT
EST: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAG GAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTAT
genomic: TGAATGATGAGTTTTACATTGGGCTCAGACAAAAGAGGGCAACTGGACAGgtttgtataa ... ttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTAT
catcattttaacttgcattaatcttgatgcaatttggtttctgctttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATGGAGAAAAAGTTCTTATTCAG
tttggtttctgctttc CT-rich tract
ttttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtataactaacataatagcataatatgatttatggcttgctcaaagttgtttatcttaatatactatcattatccgcatcattttaacttgcattaatcttgatgcaatttggtttctgctttcttcttagGAATATTCTGAACTCTTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTATGGAGAAAAAGTTCTTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA