Sequence
atgc intronic sequence ATGC exonic sequence...gtatgcttggtttttatgattgatggcttcattttttttccattttaacttttaataaattctctatttttatcttgaagtagattctttgtgtgtttagGTCATGCCGCCACTATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGG
Basic information
species | Glycine max |
transcript | GLYMA16G08350.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g38930.1 (Oryza sativa), 3'ss of exon 5
gtatgcttggtttttatgattgatggcttcatt-ttttttccattttaacttttaataaattctctatttttatcttgaagtagattctttgtgtgtttagGTCATGCCGCCACTATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGG
|| | | || |||| || ||| | | | | || | || || | | | || | | ||||| ||||||| ||||| ||| ||||||||||| |||||||| | |||| | |||||||| |||||||||| | ||||| ||||||||||| |||||||| |||
agataacttctggaggtgtttgagagcagaattacgctgttcgatgtattgtgctcaaacttgtggacacccaatttctgact-actgtttgtacttttagGTAATGCCTCCATTATGGTGCAGGCTTGATAGGATGTGGTTTGGACATCCTGGAGTTTTGGAAGGAACAATGACCAGACAACCTTTCCTCTGTCCAATGG
upper sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G011912_T01 (Zea mays), 3'ss of exon 5
-gtatgcttggtttttatgattgatggcttc-attttttttccattttaacttttaataaattctctatttttatcttgaagtagattctttgtgtgtttagGTCATGCCGCCACTATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGG
|| ||| | || | | || | | || || || | | || || || | | | | | | | |||| ||||||| ||||| ||| ||||||||||| ||||||| | |||| | |||||||| ||||| || || | ||||| ||||||||||||||||| || |||
tataattttgaatggagggagtaagatttttgaagtattatcttttcgtagtgttcgtacatgttgatgccccttttctgactgcagt--ttgtacttttagGTAATGCCTCCATTATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCTGGAATTTTAGAGGGAACAATGACCAGACAACCTTTTCTCTGCCCACTGG
upper sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 9
gtatgcttggtttttatgattgatggcttcattttttttccattttaacttttaataaattctctatttttatcttgaagtagattc-tttgtg-tgtttagGTCATGCCGCCACTATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGG
| || || || || ||| | | |||| || | ||| | | ||| | | | | || ||||| || || |||||| | ||||||||||||| |||||||||||||| | |||||| |||||| ||| |||||||| || | || ||||| || |||||||||||||||||||| |||||||
-ttcctttagtattgattatttaattcatcatattagcta-attgcatttggaaattcttattatgtcttgatctttctgttcttttatttgtgatttttagGTCATGCCTCCACTATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taacttttaataaattctctatttttatcttgaagtagattctttgtgtgtttagGTCATGCCGCCACTATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGG
ttctttgt CT-rich tract
tttaataaattctcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttggtttttatgattgatggcttcattttttttccattttaacttttaataaattctctatttttatcttgaagtagattctttgtgtgtttagGTCATGCCGCCACTATGGTGCAGGATTGATAGGCTATGGTATCCCCATCCTGGTATTTTGGAAGGGTCCATGACTAGACAACCTTTTCTCTGTCCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
gtatgct
- - - - - - - - - - tgatggc