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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggatttgttcatttcgttactacaacaaataaacatggaattggattgtgctaactgatatttactcagtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTACTTCACAAAAAAG

Basic information

species Glycine max
transcript GLYMA16G07510.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G07510.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0066g00390.t01 (Vitis vinifera), 3'ss of exon 6
gtgaggatttgttcatttcgttactacaacaaataaacatggaattggattgtgctaactgatatttactcagtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTACTTCACAAAAAAG
||       ||||| | | ||  || | | |||||||       ||   |  |||||| ||||| |||||  ||||||||||| ||||||||||||||||| ||||| |||||||  ||||||
gtttattcatgttcctcttgt--cttctagaaataaattaatcctttcttcatgctaattgatacttactatgtgcagGACTTTTCAAATAAAATGTTTATCTTGTTATACTTCAAGAAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565284|gb|BE474793.1|BE474793
EST:     AAAAGTTTTCAAATGCTATTTCCAAGCTAGGTTTCAACTCTGTGAAACAG                         GACTTCTCAAATAAAATGTTTATTTTGTTTTACTTC
genomic: AAAAGTTTTCAAATGCTATTTCCAAGCTAGGTTTCAACTCTGTGAAACAGgtgaggattt ... ctcagtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTACTTC
EST: gi|9819458|gb|BE554971.1|BE554971
EST:     AAAAGTTTTCAAATGCTATTTCCAAGCTAGGTTTCAACTCTGTGAAACAG                         GACTTCTCAAATAAAATGGTTATTTTGTTTTACTTC
genomic: AAAAGTTTTCAAATGCTATTTCCAAGCTAGGTTTCAACTCTGTGAAACAGgtgaggattt ... ctcagtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacaacaaataaacatggaattggattgtgctaactgatatttactcagtgcagGACTTCTCAAATAAAATGTTTATTTTGTTTTACTTCACAAAAAAG
                                         tttactc  CT-rich tract
       aaataaacat  TA-rich tract