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gtatgtgtagaattttgttttagcgaagttctcatctgagtcaaggcatgcttctctttaatagggaaggtattacaacaaagtagcccaaatcattatttactgtttttctttattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|16278453|gb|BI942912.1|BI942912
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCEST: gi|192310375|gb|FK002255.1|FK002255
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGC
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|254331186|gb|GR843305.1|GR843305
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|37995859|gb|CF807448.1|CF807448
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|37995462|gb|CF807051.1|CF807051
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: GATTTTGGAACTGACGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|16348742|gb|BI974337.1|BI974337
genomic: GATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|37994622|gb|CF806296.1|CF806296
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: ATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAGEST: gi|17519559|gb|BM188601.1|BM188601
genomic: ATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
EST: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGG AATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
genomic: AGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGACCAGTATGGgtatgtgtag ... tattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
ggtattacaacaaagtagcccaaatcattatttactgtttttctttattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
tttactgtttttcttt CT-rich tract
aaatcattatttactg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtagaattttgttttagcgaagttctcatctgagtcaaggcatgcttctctttaatagggaaggtattacaacaaagtagcccaaatcattatttactgtttttctttattttgcagAATTATTCGAGATATTATTCAAAACCATCTGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG