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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatttctcccattctacttttctgcatacgtgcttgtccttgtcatttgcattcaggcatgcatcatgatacttttcatctgataagagtaaaaagatatcaaatataagttggaagttcaaacaaactttaatatgattcctctgtccactgctaacagGAGGACAGCATTGACCTGGTAACTATAGTCAAGGGCACTTCATACTACCGCCGCGGCAAGTCTCATGACTATATATCAGATTATATACCACCAACACCTG

Basic information

species Glycine max
transcript GLYMA16G05580.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346772|gb|GR856494.1|GR856494
EST:     CTAAAAGCCAACTTCGTAAATTTAATGACAGTGGCCATTTCCTATTCCTG                         GAGGACAGCATTGACCTGGTAACTATAGTCAAGGGCACTTCATACTACCGC
genomic: CTAAAAGCCAACTTCGTAAATTTAATGACAGTGGCCATTTCCTATTCCTGgtataaattt ... ctgctaacagGAGGACAGCATTGACCTGGTAACTATAGTCAAGGGCACTTCATACTACCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagttggaagttcaaacaaactttaatatgattcctctgtccactgctaacagGAGGACAGCATTGACCTGGTAACTATAGTCAAGGGCACTTCATACTACCGCCGCGGCAAGTCTCATGACTATATATCAGATTATATACCACCAACACCTG
                      ctttaat  putative branch site (score: 4)
                                 ttcctctgtccact  putative PPT
               aaacaaactttaatat  TA-rich tract