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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatcgttgagccttggcataaatgaaaaatacgattatctgaaggatgattttagacactgttatgttttcctatttgtgcttgcagGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG

Basic information

species Glycine max
transcript GLYMA16G05380.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05380.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 9
gtttgtatcgttgagccttggcataaatgaaaaatacgattatctgaaggatgattttagacactgttatgttttcctatttgtgct----tgcagGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG
||||||| |        || |     || |  |  || ||||    | | | || || | |||| | |    |||     |     |    | |||||  || | || ||||| |||||||| || ||||| |||||| ||||||| || || || || ||||||||||| ||||| |||||||| |||
gtttgtagcagcacaattttg-----attacgagaaccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337971|gb|CO981837.1|CO981837
EST:     ACNNNAAAGCTCCAGGTACTCTCATTGCTAAGACAAGGGATATGAGCAAG                         GCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATT
genomic: ACCCTAAAGCTCCAGGTACTCTCATTGCTAAGACAAGGGATATGAGCAAGgtttgtatcg ... gtgcttgcagGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattatctgaaggatgattttagacactgttatgttttcctatttgtgcttgcagGCATTATTAACTAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG
             atgatttta  TA-rich tract