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gtgaaaatctgttctttgataactattttattgaatgctttttggtatatgagctcaatacgatgggagcaactggatacttagttactttctagaatagatttatccgcattcttttgaactaccttttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
species | Glycine max |
transcript | GLYMA16G05340.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG ACTATAACCCAATCCAGTCTATCTCTTC-AAGGAATTGTACTACGTCGAGGEST: gi|193600295|gb|FK551176.1|FK551176
genomic: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATA-CCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGG
EST: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG ACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGTEST: gi|208296452|gb|GE089664.1|GE089664
genomic: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
EST: CTCAATAATACAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG ACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGTEST: gi|298181752|gb|HO025927.1|HO025927
genomic: CTC-ATAAT-CAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
EST: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAG ACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
genomic: TACTCATAATCAAAAGTCTGACACATAGAGAAATCAATGCAGTTATAAAGgtgaaaatct ... tttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGT
agttactttctagaatagatttatccgcattcttttgaactaccttttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
ctacctttt CT-rich tract
tagaatagatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaatctgttctttgataactattttattgaatgctttttggtatatgagctcaatacgatgggagcaactggatacttagttactttctagaatagatttatccgcattcttttgaactaccttttatgacagACTATACCCAATCCAGTCTATCTCTTCCAAGGAATTGTACTACGTCGAGGTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA