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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctgaattttctcttcctttcccttcttcaaacaagaaagaagaaatgcactattgttaactaccttcctaacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG

Basic information

species Glycine max
transcript GLYMA16G04560.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04560.2 (Glycine max), 3'ss of exon 8
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 7
-------gttagtctgaattttctcttcctttcccttcttcaaacaagaaagaagaaatgcactattgttaactaccttcctaacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG
       |  | |||||   ||   ||    ||  |  |     |||    |   ||  | |    ||| |  || ||  ||     |||||| |||||||||||||| ||| ||||||||||||| ||||  ||||| |||||||| || || || || ||||| ||||||||||||
gttattcgaaaatctgatactttgtttttgctctttcttcttctcaaactcgcgtaacagaaactctgtaa--tatctgtct---ccgcagATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994949|gb|BQ786477.1|BQ786477
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|26058522|gb|CA801436.1|CA801436
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|22541194|gb|BU091037.1|BU091037
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|8404383|gb|BE060017.1|BE060017
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|8403457|gb|BE059091.1|BE059091
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|13252589|gb|BG363492.1|BG363492
EST:     CCAACTGACCCCGAAGCTGATGAG                         ATTTTGAAGAAGAAA-GGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: CCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|8827932|gb|BE211662.1|BE211662
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|6200845|gb|AW152945.1|AW152945
EST:     TGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: TGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|192308766|gb|FG999791.1|FG999791
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|151413195|gb|EV283003.1|EV283003
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
EST: gi|8402782|gb|BE058416.1|BE058416
EST:     AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAG                         ATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA
genomic: AATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAAGCTGATGAGgttagtctga ... taacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcaaacaagaaagaagaaatgcactattgttaactaccttcctaacttgcagATTTTGAAGAAGAAAGGGGTTGTGATCCTCCCAGACATATTTGCAAATTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTTCAG
                                          tcctaac  putative branch site (score: 1)
                                    ctaccttcct  CT-rich tract
                           tattgttaa  TA-rich tract