1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagtctcgaagtagtttttttgtcttttcctttcttttatcaacaagacttagttgcatagttccttgtattgcttaaaattctgaaatttatttgatagGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGCTTTAGAGTTGTTGAAAG
species | Glycine max |
transcript | GLYMA16G04300.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATCTGAGGACCTGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAG GTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAAEST: gi|7042056|gb|AW471950.1|AW471950
genomic: AATCTGAGGACCTGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAGgttagtttct ... tatttgatagGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAA
EST: AATCTGAGGACCTGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAG GTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAAEST: gi|26058471|gb|CA801385.1|CA801385
genomic: AATCTGAGGACCTGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAGgttagtttct ... tatttgatagGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAA
EST: AATCTGAGGACCTGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAG GTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAA
genomic: AATCTGAGGACCTGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAGgttagtttct ... tatttgatagGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAA
agacttagttgcatagttccttgtattgcttaaaattctgaaatttatttgatagGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGCTTTAGAGTTGTTGAAAG
tttattt CT-rich tract
tattgcttaaaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtctcgaagtagtttttttgtcttttcctttcttttatcaacaagacttagttgcatagttccttgtattgcttaaaattctgaaatttatttgatagGTGGAAGAGGATGCCGTGTGTGAACAGATCAGCGCAGACGAGGGTGGAAAAGATTTAGCTTTTGTTGTGCAGAAGAAAGATGCTTTAGAGTTGTTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - -agttgca