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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acccacgtactgctggaatctatctggaattttctgctattgcttttcaaagtgaagttctagttttgatttaaccaaggtacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT

Basic information

species Glycine max
transcript GLYMA16G02860.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193654990|gb|FK598702.1|FK598702
EST:     AGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: AGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|6482602|gb|AW201847.1|AW201847
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTG
EST: gi|22928262|gb|BU545401.1|BU545401
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|22928383|gb|BU545522.1|BU545522
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|9564325|gb|BE473834.1|BE473834
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|58020902|gb|CX707644.1|CX707644
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|193648973|gb|FK597496.1|FK597496
EST:     AGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: AGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|58020559|gb|CX707301.1|CX707301
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
EST: gi|58020730|gb|CX707472.1|CX707472
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaagtgaagttctagttttgatttaaccaaggtacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCGGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT
                       atttaac  putative branch site (score: 3)
                                     cctttgttttcatttc  putative PPT
               tagttttgatttaa  TA-rich tract