1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtttttgtttcatataacagctttggaatgccctttcctatatttcaatagaagttccttttcagttgtatttatgttcttaaatttatctcagGAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAACATAATACA
species | Glycine max |
transcript | GLYMA16G01790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTT GAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAAEST: gi|208341439|gb|GE139065.1|GE139065
genomic: CAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTTgtatgttttt ... tttatctcagGAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAA
EST: CAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTT GAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAAEST: gi|208306809|gb|GE107940.1|GE107940
genomic: CAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTTgtatgttttt ... tttatctcagGAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAA
EST: CAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTT GAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAA
genomic: CAGTTTACAGGCACCATTGATGTCCTTGCTAATCTGCCTCTTGGAACTTTgtatgttttt ... tttatctcagGAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAA
atatttcaatagaagttccttttcagttgtatttatgttcttaaatttatctcagGAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAACATAATACA
tttatctc CT-rich tract
ttgtatttatgttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttttgtttcatataacagctttggaatgccctttcctatatttcaatagaagttccttttcagttgtatttatgttcttaaatttatctcagGAATGTGGGAAACAATCATTTTACTGGCTGGATACCAGAACAATTGAATAACATAATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA