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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggactaaagtgctgtgtgctttatcattaatatgattaaagttttccatgaattatttttctgcaattctcagctttttaattaaggtgggcaattattggctaacacttatctttttctccttgtatcatttcagACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTA

Basic information

species Glycine max
transcript GLYMA16G00950.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g01370.t01 (Vitis vinifera), 3'ss of exon 7
gtatggactaaagtgctgtgtgctttatcattaatatgattaaagttttccatgaattatttttctgcaattctcagctttttaattaaggtgggcaa--ttattggctaacacttatct--tt--ttctccttgtatcatttcagACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTA
                                             ||  ||||  || ||||  |   || | | || |     || || ||    |   |  ||  ||   |  | |||  ||  || ||||| | |  |  |||||||||||| |||||||||||||| || |||||||| || |||||||| ||||||||||||||| | || ||||| |
---------------------------------------------ttgaccatatat-atttggcataaaatttaaggtcccccatcaaagtatctatcctcttttcctcttatctgtctagttggttttccttatgttttgacagACACCATCAGCATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCAGGCAACAAGGACTTGTATTTAGGAACATTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaggtgggcaattattggctaacacttatctttttctccttgtatcatttcagACACCATCAACATGGAAGGTGGCAGGCCCGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTA
                  ggctaac  putative branch site (score: 2)
                          cttatctttttctcct  CT-rich tract
                           ttatcttttt  TA-rich tract