Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtctaaagttttttacatgtttttttcctagcttgtttctgatgcactttagtctcagttcattcttggacttattattactactttttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42300.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 8
--tgtgtctaaagttttttacatgtttttttcctagcttgtttctgatgcactttagtctcagttcattcttggacttattattactactttttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG
  | | |   |  | |    ||   |    | ||  |||     ||        |||    | | | |  ||  | |  |   |  |  ||||| ||||||||| ||| |||||| || || |||||  | |||   || |||||||||||||| || ||  |||| ||||||||||||||||||
gttatatgccagctgtcaaccaaaatgaacttcttcctttgacttggcttgtgatagatataatgcctattt--attggtgggtttttatttttggttgcagATCATGTTTATAAAGCCATAGATGCCCTACCTCAGTCAGCTCATCCAATGACCCAGTTTGCAACGGGTGTCATGGCCCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410306|gb|EV280121.1|EV280121
EST:     GCAAGTTGACTCATTATCCAAAGAATTGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
EST: gi|151408594|gb|EV278402.1|EV278402
EST:     GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
EST: gi|19052548|gb|BM731215.1|BM731215
EST:     GCAAGTTGACTCATTATCCAAAGAAATGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGGATTGCCT
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCT
EST: gi|213604537|gb|DB970657.1|DB970657
EST:     GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG                         AATATGCTTATAAGGCAATTGATGCATTG
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTG
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATTCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAG                         ATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA
genomic: GCAAGTTGACTCATTATCCAAGGAATTGCGAAGTCGTGCAACTATCCCAGgttctgtttt ... ttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactttagtctcagttcattcttggacttattattactactttttcgttgcagATTATGCTTATAAGGCAATTGATGCATTGCCTGTTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG
                                      ctactttttc  CT-rich tract
                             ttattattactacttt  TA-rich tract