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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagtgaatgctatatatttttatctagtagcaaaaacatgatacaatgcattattaatgtgtttttttttttttttttacttatgataacgtatgcagGTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGGGACTCATCTTCCACCTCATCATGATGATATCCCAAGTGCACATTTCGAA

Basic information

species Glycine max
transcript GLYMA15G37490.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37490.2 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 3'ss of exon 7
tgaagtgaatgctatatatttttatctagtagcaaaaacatgatacaatgcattattaatgtgtttttttttttttttttact-tatgataacgta-tgcagGTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGGGACT-CATCTTCCACCTCATCATGATGA-TATC-CCAAGTGCACATTTCGAA
    |||||   | ||   || |      |   ||||   |   | ||| ||   || |||  ||| |||||     |   || |||  |  | || ||||||| || |||||||||||||| ||||||||||  || ||| |||||   |||||           |    || | ||  | | |  |  | |    ||| |   
-cttgtgaa-attgtaccattatcctgtttgcgaaaagtctctgagaattcaggtttcatgcttttatttttagccataacctatatattttcttaatgcagGTTACACTTGTAAAGATGGTAAACGAGGCTACCGCAAACCTTCCAGGGTGGGATGATGGAAGATAGACTATGACGACAAATGTTGCTGATTAGTGATTAC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719634|gb|AW307281.1|AW307281
EST:     CTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTG                         GTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGG
genomic: CTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctag ... acgtatgcagGTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgcattattaatgtgtttttttttttttttttacttatgataacgtatgcagGTAACCCTTGTAAAGATGGTGAACGAGGCTAGTGCTAACATTCCAAATTGGGACTCATCTTCCACCTCATCATGATGATATCCCAAGTGCACATTTCGAA
                                        tgataac  putative branch site (score: 2)
      attattaatgtgtttt  TA-rich tract