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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaattaactacgaactatagcatgccaattaagaatagaatccacattttttactcttgcgttgaccacattacttgatctgattattgttatgcttatagttagttaaaagaaaaatgtttacattttgcagATACTTAGGTGTGGTCCACCACCTATGAATAAAGCTATGGCTGCTCATCTTGACGCACTTGGCTATACATCAAACATGCAGTTCGAGTTCTAAAGCTTCA

Basic information

species Glycine max
transcript GLYMA15G34620.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662175|gb|BI699546.1|BI699546
EST:     CGAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAG                         ATACTTAGGTGTGGTCCACCACCTATGAATAAAGCTATGGCTGCTCATCTT
genomic: CGAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAGgttgaattaa ... cattttgcagATACTTAGGTGTGGTCCACCACCTATGAATAAAGCTATGGCTGCTCATCTT
EST: gi|151411830|gb|EV281641.1|EV281641
EST:     GAAAGGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAG                         ATACTTAG-TGTGGTCCACCACCTATGAATAAAGCTATGGCTGCTCATCTT
genomic: GAA-GGAGATTATTAAATCACATTGTCCTGAACCAGCCCACGATATTCAGgttgaattaa ... cattttgcagATACTTAGGTGTGGTCCACCACCTATGAATAAAGCTATGGCTGCTCATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgattattgttatgcttatagttagttaaaagaaaaatgtttacattttgcagATACTTAGGTGTGGTCCACCACCTATGAATAAAGCTATGGCTGCTCATCTTGACGCACTTGGCTATACATCAAACATGCAGTTCGAGTTCTAAAGCTTCA
                 ttatagttagttaaaa  TA-rich tract