1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttctggatgaattctttgttgccattcaacccttatgattcagaagcttatttctatatataaaatctgacatttacgcttgtgcaaaaacttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGAACTGTGATAGCTGCGTTACTTCCTCGATTAGTTGTAAAATATATGTAT
species | Glycine max |
transcript | GLYMA15G29860.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTG GGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGEST: gi|192314108|gb|FK011480.1|FK011480
genomic: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTGgtatgtgcta ... acttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGG
EST: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTG GGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGEST: gi|192316428|gb|FK009281.1|FK009281
genomic: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTGgtatgtgcta ... acttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGG
EST: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTG GGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGEST: gi|192316429|gb|FK009282.1|FK009282
genomic: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTGgtatgtgcta ... acttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGG
EST: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTG GGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGEST: gi|22933097|gb|BU550236.1|BU550236
genomic: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTGgtatgtgcta ... acttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGG
EST: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTG GGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGG
genomic: TTCATTTGTGTCATTATTATTGATGCCATACCAGCCCTTCCTGGTTACTGgtatgtgcta ... acttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGG
agcttatttctatatataaaatctgacatttacgcttgtgcaaaaacttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGAACTGTGATAGCTGCGTTACTTCCTCGATTAGTTGTAAAATATATGTAT
atctgac putative branch site (score: 3)
cttttgc putative PPT
atttctatatataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctggatgaattctttgttgccattcaacccttatgattcagaagcttatttctatatataaaatctgacatttacgcttgtgcaaaaacttttgcagGGCTATCTTTCATGCCGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGAACTGTGATAGCTGCGTTACTTCCTCGATTAGTTGTAAAATATATGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
cttctgg
- - - - tgaattc
- - - - - - - - -tgttgcc
- - - - - - - - - - - - - tcaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgc