Sequence
atgc intronic sequence ATGC exonic sequence...taaataacaagtctgtgtctctgtgtgtgtagaaatacatacttcattgtattggatttatatgagtattttaaacatttcaacttttactcctctctagGTGCTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTGTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTGGTCCGGACTGATTTGGATACA
Basic information
species | Glycine max |
transcript | GLYMA15G24080.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G24080.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 3'ss of exon 7
------------------------taaataacaagtctgtgtctctgtgtgtgtagaaatacatacttcattgtattggatttatatgagtattttaaacatttcaactt--ttactc-------ctctctagGTGCTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTGTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTGGTCCGGACTGATTTGGATACA
| |||| | | | | ||| | |||| || ||| || || ||| ||| | | | ||| | | | | | || | | | ||||| |||||||||||| || ||| | || || |||||||||||||||||||||||| |||| ||||||||| ||||| || ||||||||||||||
gtaagttatattttcttgagctttttctctacaataatttatttttgtattgatagagatgcatcctgtatcaaatt---cttaattcaatgctttctatgctactgtgtaataacgcaatctggcaatgtagGTTTTTAGCTGATGAGGGCGCCGTCTTGCTCCTCTACTCATTGTTGCAAGGGAATTCCGACTTTAAGGAGTATGTGTTGGTGCGAACTGATTTGGATACT
upper sequence: GLYMA15G24080.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 7
taaataacaagtctgtgtctctgtgtgtgtagaaatacatacttcattgtattggattta---tatgagtattttaaacatttcaacttttact---cctctctagGTGCTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTGTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTGGTCCGGACTGATTTGGATACA
| |||| | | ||| | || | | || | | || |||| | || | ||| | ||| ||||| || | | |||| ||| ||||||||||| || ||||||| ||||||||| || |||| || || || ||| ||||||||||| ||||| || ||||||||||| |||
-----tttgaatctgaaaaagtataaatgt-gtgatccttgatttgtaatcatgcatttgctttctgtcttcttttatttttttaacttctatagtacttgctcagGTTCTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtattggatttatatgagtattttaaacatttcaacttttactcctctctagGTGCTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTGTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTGGTCCGGACTGATTTGGATACA
tttcaacttttactcc CT-rich tract
atttatatgagtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaataacaagtctgtgtctctgtgtgtgtagaaatacatacttcattgtattggatttatatgagtattttaaacatttcaacttttactcctctctagGTGCTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTGTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTGGTCCGGACTGATTTGGATACA
- - - - - gtctgtg
- - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - -gaaatac